Detailed information of SNP:
|
SNP ID:
sf1011440955(Gbrowse)
Chromosome: chr10 Position: 11440955 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1367 | 63.13% | 36.87% |
| All Indica | 755 | 46.49% | 53.51% |
| All Japonica | 494 | 85.83% | 14.17% |
| Aus | 64 | 79.69% | 20.31% |
| Indica I | 354 | 44.92% | 55.08% |
| Indica II | 205 | 46.83% | 53.17% |
| Indica Intermediate | 196 | 48.98% | 51.02% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 36.26% | 63.74% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011440955 | G->A | LOC_Os10g22240(LOC_Os10g22240.1) | Non-Synonymous SNP |