Detailed information of SNP:
|
SNP ID:
sf1011441276(Gbrowse)
Chromosome: chr10 Position: 11441276 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1344 | 70.83% | 29.17% |
| All Indica | 740 | 59.59% | 40.41% |
| All Japonica | 486 | 86.01% | 13.99% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 343 | 59.18% | 40.82% |
| Indica II | 200 | 57.50% | 42.50% |
| Indica Intermediate | 197 | 62.44% | 37.56% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 85 | 45.88% | 54.12% |
| Japonica Intermediate | 66 | 84.85% | 15.15% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 71.05% | 28.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011441276 | G->A | LOC_Os10g22240(LOC_Os10g22240.1) | Non-Synonymous SNP |