Detailed information of SNP:
|
SNP ID:
sf1011442577(Gbrowse)
Chromosome: chr10 Position: 11442577 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1350 | 73.26% | 26.74% |
| All Indica | 752 | 62.63% | 37.37% |
| All Japonica | 486 | 91.36% | 8.64% |
| Aus | 56 | 57.14% | 42.86% |
| Indica I | 354 | 59.89% | 40.11% |
| Indica II | 199 | 66.83% | 33.17% |
| Indica Intermediate | 199 | 63.32% | 36.68% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 85 | 62.35% | 37.65% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011442577 | A->T | LOC_Os10g22250(LOC_Os10g22250.1) | SNPs that introduce stop codons |