Detailed information of SNP:
|
SNP ID:
sf1011446013(Gbrowse)
Chromosome: chr10 Position: 11446013 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 95.45% | 4.55% |
| All Indica | 792 | 93.69% | 6.31% |
| All Japonica | 492 | 99.80% | 0.20% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 371 | 94.07% | 5.93% |
| Indica II | 211 | 93.84% | 6.16% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 90 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011446013 | A->T | INTERGENIC | None |