Detailed information of SNP:
|
SNP ID:
sf1011497929(Gbrowse)
Chromosome: chr10 Position: 11497929 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 71.24% | 28.76% |
| All Indica | 798 | 54.64% | 45.36% |
| All Japonica | 495 | 92.53% | 7.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 50.27% | 49.73% |
| Indica II | 213 | 54.46% | 45.54% |
| Indica Intermediate | 211 | 62.56% | 37.44% |
| Temperate Japonica | 333 | 94.89% | 5.11% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011497929 | T->C | INTERGENIC | None |