Detailed information of SNP:
|
SNP ID:
sf1011564814(Gbrowse)
Chromosome: chr10 Position: 11564814 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1348 | 93.62% | 6.38% |
| All Indica | 733 | 90.45% | 9.55% |
| All Japonica | 494 | 98.38% | 1.62% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 330 | 89.39% | 10.61% |
| Indica II | 204 | 93.14% | 6.86% |
| Indica Intermediate | 199 | 89.45% | 10.55% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 91 | 95.60% | 4.40% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011564814 | C->A | INTERGENIC | None |