Detailed information of SNP:
|
SNP ID:
sf1011580488(Gbrowse)
Chromosome: chr10 Position: 11580488 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 95.05% | 4.95% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 492 | 86.18% | 13.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 98.80% | 1.20% |
| Tropical Japonica | 91 | 50.55% | 49.45% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011580488 | A->G | LOC_Os10g22484(LOC_Os10g22484.1) | INTRON |
| sf1011580488 | A->G | LOC_Os10g22484(LOC_Os10g22484.2) | INTRON |