Detailed information of SNP:
|
SNP ID:
sf1011595267(Gbrowse)
Chromosome: chr10 Position: 11595267 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 78.56% | 21.44% |
| All Indica | 798 | 68.92% | 31.08% |
| All Japonica | 497 | 89.54% | 10.46% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 77.33% | 22.67% |
| Indica II | 213 | 54.93% | 45.07% |
| Indica Intermediate | 210 | 68.10% | 31.90% |
| Temperate Japonica | 335 | 85.07% | 14.93% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011595267 | C->T | LOC_Os10g22510(LOC_Os10g22510.1) | UTR_3_PRIME |