Detailed information of SNP:
|
SNP ID:
sf1011647310(Gbrowse)
Chromosome: chr10 Position: 11647310 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 53.77% | 46.23% |
| All Indica | 799 | 67.46% | 32.54% |
| All Japonica | 497 | 23.74% | 76.26% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 77.33% | 22.67% |
| Indica II | 213 | 53.99% | 46.01% |
| Indica Intermediate | 211 | 63.51% | 36.49% |
| Temperate Japonica | 335 | 20.90% | 79.10% |
| Tropical Japonica | 94 | 35.11% | 64.89% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011647310 | A->G | INTERGENIC | None |