Detailed information of SNP:
|
SNP ID:
sf1011650260(Gbrowse)
Chromosome: chr10 Position: 11650260 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 55.19% | 44.81% |
| All Indica | 799 | 78.97% | 21.03% |
| All Japonica | 496 | 26.01% | 73.99% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 63.73% | 36.27% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 334 | 15.27% | 84.73% |
| Tropical Japonica | 94 | 50.00% | 50.00% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011650260 | C->T | INTERGENIC | None |