Detailed information of SNP:
|
SNP ID:
sf1011689052(Gbrowse)
Chromosome: chr10 Position: 11689052 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1369 | 91.09% | 8.91% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 449 | 73.05% | 26.95% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 289 | 63.67% | 36.33% |
| Tropical Japonica | 92 | 93.48% | 6.52% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011689052 | T->C | INTERGENIC | None |