Detailed information of SNP:
|
SNP ID:
sf1011757933(Gbrowse)
Chromosome: chr10 Position: 11757933 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1161 | 51.42% | 48.58% |
| All Indica | 640 | 20.78% | 79.22% |
| All Japonica | 492 | 91.87% | 8.13% |
| Aus | 3 | 0.00% | 100.00% |
| Indica I | 246 | 7.72% | 92.28% |
| Indica II | 201 | 35.32% | 64.68% |
| Indica Intermediate | 193 | 22.28% | 77.72% |
| Temperate Japonica | 333 | 98.20% | 1.80% |
| Tropical Japonica | 93 | 78.49% | 21.51% |
| Japonica Intermediate | 66 | 78.79% | 21.21% |
| Group VI/Aromatic | 0 | 0.00% | 100.00% |
| Intermediate | 26 | 46.15% | 53.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011757933 | G->A | INTERGENIC | None |