Detailed information of SNP:
SNP ID:
sf1011765312(Gbrowse)
Chromosome: chr10 Position: 11765312 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1384 | 96.46% | 3.54% |
All Indica | 799 | 100.00% | 0.00% |
All Japonica | 464 | 89.44% | 10.56% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 302 | 84.11% | 15.89% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 98.53% | 1.47% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1011765312 | C->T | LOC_Os10g22770(LOC_Os10g22770.1) | Non-Synonymous SNP |