Detailed information of SNP:
|
SNP ID:
sf1011799282(Gbrowse)
Chromosome: chr10 Position: 11799282 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1269 | 71.87% | 28.13% |
| All Indica | 765 | 87.19% | 12.81% |
| All Japonica | 386 | 34.20% | 65.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 95.45% | 4.55% |
| Indica II | 186 | 76.34% | 23.66% |
| Indica Intermediate | 205 | 81.95% | 18.05% |
| Temperate Japonica | 289 | 21.45% | 78.55% |
| Tropical Japonica | 57 | 80.70% | 19.30% |
| Japonica Intermediate | 40 | 60.00% | 40.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 86.49% | 13.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011799282 | G->A | INTERGENIC | None |