Detailed information of SNP:
|
SNP ID:
sf1011861038(Gbrowse)
Chromosome: chr10 Position: 11861038 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 94.27% | 5.73% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 65 | 12.31% | 87.69% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 12 | 25.00% | 75.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011861038 | C->T | LOC_Os10g22940(LOC_Os10g22940.1) | INTRON |