Detailed information of SNP:
|
SNP ID:
sf1011928208(Gbrowse)
Chromosome: chr10 Position: 11928208 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 89.20% | 10.80% |
| All Indica | 799 | 90.24% | 9.76% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 62 | 14.52% | 85.48% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 11 | 27.27% | 72.73% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011928208 | G->C | INTERGENIC | None |