Detailed information of SNP:
|
SNP ID:
sf1011928858(Gbrowse)
Chromosome: chr10 Position: 11928858 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 89.20% | 10.80% |
| All Indica | 799 | 90.11% | 9.89% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 62 | 11.29% | 88.71% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 11 | 27.27% | 72.73% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1011928858 | C->T | INTERGENIC | None |