Detailed information of SNP:
|
SNP ID:
sf1012036420(Gbrowse)
Chromosome: chr10 Position: 12036420 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 96.82% | 3.18% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 43 | 23.26% | 76.74% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 9 | 33.33% | 66.67% |
| Intermediate | 35 | 94.29% | 5.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012036420 | C->T | INTERGENIC | None |