Detailed information of SNP:
|
SNP ID:
sf1012060725(Gbrowse)
Chromosome: chr10 Position: 12060725 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1331 | 61.01% | 38.99% |
| All Indica | 794 | 94.96% | 5.04% |
| All Japonica | 492 | 6.71% | 93.29% |
| Aus | 10 | 80.00% | 20.00% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 210 | 95.24% | 4.76% |
| Indica Intermediate | 209 | 96.17% | 3.83% |
| Temperate Japonica | 333 | 3.90% | 96.10% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 65 | 13.85% | 86.15% |
| Group VI/Aromatic | 2 | 0.00% | 100.00% |
| Intermediate | 33 | 51.52% | 48.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012060725 | A->T | INTERGENIC | None |