Detailed information of SNP:
|
SNP ID:
sf1012082164(Gbrowse)
Chromosome: chr10 Position: 12082164 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1339 | 76.10% | 23.90% |
| All Indica | 724 | 69.61% | 30.39% |
| All Japonica | 492 | 98.58% | 1.42% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 322 | 86.02% | 13.98% |
| Indica II | 209 | 62.20% | 37.80% |
| Indica Intermediate | 193 | 50.26% | 49.74% |
| Temperate Japonica | 332 | 98.49% | 1.51% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012082164 | C->T | INTERGENIC | None |