Detailed information of SNP:
SNP ID:
sf1012112195(Gbrowse)
Chromosome: chr10 Position: 12112195 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1408 | 63.57% | 36.43% |
All Indica | 790 | 39.49% | 60.51% |
All Japonica | 496 | 94.76% | 5.24% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 368 | 26.90% | 73.10% |
Indica II | 212 | 49.06% | 50.94% |
Indica Intermediate | 210 | 51.90% | 48.10% |
Temperate Japonica | 335 | 97.61% | 2.39% |
Tropical Japonica | 93 | 91.40% | 8.60% |
Japonica Intermediate | 68 | 85.29% | 14.71% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1012112195 | C->T | INTERGENIC | None |