Detailed information of SNP:



SNP ID: sf1012112195(Gbrowse)

Chromosome: chr10

Position: 12112195
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1408 63.57% 36.43%
All Indica790 39.49% 60.51%
All Japonica496 94.76% 5.24%
Aus67 100.00% 0.00%
Indica I368 26.90% 73.10%
Indica II212 49.06% 50.94%
Indica Intermediate210 51.90% 48.10%
Temperate Japonica335 97.61% 2.39%
Tropical Japonica93 91.40% 8.60%
Japonica Intermediate68 85.29% 14.71%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 78.05% 21.95%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1012112195 C->T INTERGENIC None