Detailed information of SNP:
|
SNP ID:
sf1012164887(Gbrowse)
Chromosome: chr10 Position: 12164887 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1393 | 53.34% | 46.66% |
| All Indica | 791 | 31.10% | 68.90% |
| All Japonica | 479 | 94.99% | 5.01% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 373 | 40.48% | 59.52% |
| Indica II | 211 | 22.75% | 77.25% |
| Indica Intermediate | 207 | 22.71% | 77.29% |
| Temperate Japonica | 321 | 95.02% | 4.98% |
| Tropical Japonica | 92 | 93.48% | 6.52% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012164887 | C->G | INTERGENIC | None |