Detailed information of SNP:
|
SNP ID:
sf1012168690(Gbrowse)
Chromosome: chr10 Position: 12168690 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 82.94% | 17.06% |
| All Indica | 795 | 72.96% | 27.04% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 65 | 84.62% | 15.38% |
| Indica I | 374 | 86.90% | 13.10% |
| Indica II | 213 | 64.32% | 35.68% |
| Indica Intermediate | 208 | 56.73% | 43.27% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012168690 | A->G | LOC_Os10g23870(LOC_Os10g23870.1) | Synonymous |