Detailed information of SNP:
|
SNP ID:
sf1012171526(Gbrowse)
Chromosome: chr10 Position: 12171526 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1395 | 91.47% | 8.53% |
| All Indica | 776 | 85.05% | 14.95% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 363 | 79.89% | 20.11% |
| Indica II | 209 | 86.60% | 13.40% |
| Indica Intermediate | 204 | 92.65% | 7.35% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012171526 | G->C | INTERGENIC | None |