Detailed information of SNP:
|
SNP ID:
sf1012173185(Gbrowse)
Chromosome: chr10 Position: 12173185 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 86.01% | 13.99% |
| All Indica | 795 | 76.98% | 23.02% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 372 | 91.13% | 8.87% |
| Indica II | 212 | 68.87% | 31.13% |
| Indica Intermediate | 211 | 60.19% | 39.81% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012173185 | C->T | INTERGENIC | None |