Detailed information of SNP:
|
SNP ID:
sf1012174133(Gbrowse)
Chromosome: chr10 Position: 12174133 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 87.17% | 12.83% |
| All Indica | 784 | 78.95% | 21.05% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 366 | 91.53% | 8.47% |
| Indica II | 211 | 71.09% | 28.91% |
| Indica Intermediate | 207 | 64.73% | 35.27% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012174133 | A->G | INTERGENIC | None |