Detailed information of SNP:
|
SNP ID:
sf1012174824(Gbrowse)
Chromosome: chr10 Position: 12174824 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 97.40% | 2.60% |
| All Indica | 775 | 96.65% | 3.35% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 59 | 89.83% | 10.17% |
| Indica I | 360 | 96.67% | 3.33% |
| Indica II | 208 | 94.71% | 5.29% |
| Indica Intermediate | 207 | 98.55% | 1.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012174824 | C->T | LOC_Os10g23880(LOC_Os10g23880.1) | INTRON |