Detailed information of SNP:
|
SNP ID:
sf1012179165(Gbrowse)
Chromosome: chr10 Position: 12179165 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1320 | 58.33% | 41.67% |
| All Indica | 706 | 28.90% | 71.10% |
| All Japonica | 494 | 93.72% | 6.28% |
| Aus | 64 | 93.75% | 6.25% |
| Indica I | 333 | 20.72% | 79.28% |
| Indica II | 186 | 34.95% | 65.05% |
| Indica Intermediate | 187 | 37.43% | 62.57% |
| Temperate Japonica | 334 | 96.71% | 3.29% |
| Tropical Japonica | 93 | 89.25% | 10.75% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012179165 | T->C | LOC_Os10g23880(LOC_Os10g23880.1) | INTRON |