Detailed information of SNP:
|
SNP ID:
sf1012226412(Gbrowse)
Chromosome: chr10 Position: 12226412 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 85.91% | 14.09% |
| All Indica | 779 | 76.38% | 23.62% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 369 | 91.06% | 8.94% |
| Indica II | 210 | 68.57% | 31.43% |
| Indica Intermediate | 200 | 57.50% | 42.50% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012226412 | C->G | LOC_Os10g24000(LOC_Os10g24000.1) | Non-Synonymous SNP |