Detailed information of SNP:
|
SNP ID:
sf1012228785(Gbrowse)
Chromosome: chr10 Position: 12228785 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 66.90% | 33.10% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 495 | 8.48% | 91.52% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 5.39% | 94.61% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 67 | 17.91% | 82.09% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012228785 | G->A | INTERGENIC | None |