Detailed information of SNP:
|
SNP ID:
sf1012242491(Gbrowse)
Chromosome: chr10 Position: 12242491 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 85.33% | 14.67% |
| All Indica | 798 | 77.69% | 22.31% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 92.25% | 7.75% |
| Indica II | 213 | 68.54% | 31.46% |
| Indica Intermediate | 211 | 61.14% | 38.86% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012242491 | G->A | INTERGENIC | None |