Detailed information of SNP:
|
SNP ID:
sf1012261173(Gbrowse)
Chromosome: chr10 Position: 12261173 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1253 | 94.01% | 5.99% |
| All Indica | 674 | 90.65% | 9.35% |
| All Japonica | 486 | 99.59% | 0.41% |
| Aus | 50 | 90.00% | 10.00% |
| Indica I | 306 | 88.24% | 11.76% |
| Indica II | 183 | 93.44% | 6.56% |
| Indica Intermediate | 185 | 91.89% | 8.11% |
| Temperate Japonica | 331 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 63 | 100.00% | 0.00% |
| Group VI/Aromatic | 10 | 70.00% | 30.00% |
| Intermediate | 33 | 93.94% | 6.06% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012261173 | A->C | LOC_Os10g24070(LOC_Os10g24070.1) | INTRON |