Detailed information of SNP:
|
SNP ID:
sf1012269444(Gbrowse)
Chromosome: chr10 Position: 12269444 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 96.33% | 3.67% |
| All Indica | 796 | 99.37% | 0.63% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 48 | 31.25% | 68.75% |
| Indica I | 373 | 98.66% | 1.34% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 10 | 20.00% | 80.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012269444 | T->A | LOC_Os10g24094(LOC_Os10g24094.1) | UTR_3_PRIME |
| sf1012269444 | T->A | LOC_Os10g24094(LOC_Os10g24094.2) | UTR_3_PRIME |