Detailed information of SNP:
|
SNP ID:
sf1012284084(Gbrowse)
Chromosome: chr10 Position: 12284084 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 62.22% | 37.78% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 497 | 7.44% | 92.56% |
| Aus | 58 | 39.66% | 60.34% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012284084 | T->C | INTERGENIC | None |