Detailed information of SNP:
|
SNP ID:
sf1012285994(Gbrowse)
Chromosome: chr10 Position: 12285994 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 91.27% | 8.73% |
| All Indica | 780 | 85.26% | 14.74% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 371 | 95.96% | 4.04% |
| Indica II | 206 | 78.16% | 21.84% |
| Indica Intermediate | 203 | 72.91% | 27.09% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012285994 | C->T | LOC_Os10g24110(LOC_Os10g24110.1) | Non-Synonymous SNP |