Detailed information of SNP:
|
SNP ID:
sf1012291120(Gbrowse)
Chromosome: chr10 Position: 12291120 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1379 | 85.06% | 14.94% |
| All Indica | 762 | 85.30% | 14.70% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 368 | 95.92% | 4.08% |
| Indica II | 192 | 78.12% | 21.88% |
| Indica Intermediate | 202 | 72.77% | 27.23% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012291120 | T->C | LOC_Os10g24120(LOC_Os10g24120.1) | INTRON |