Detailed information of SNP:
|
SNP ID:
sf1012295934(Gbrowse)
Chromosome: chr10 Position: 12295934 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 89.61% | 10.39% |
| All Indica | 785 | 82.68% | 17.32% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 371 | 94.88% | 5.12% |
| Indica II | 210 | 73.33% | 26.67% |
| Indica Intermediate | 204 | 70.10% | 29.90% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012295934 | T->A | INTERGENIC | None |