Detailed information of SNP:
|
SNP ID:
sf1012305921(Gbrowse)
Chromosome: chr10 Position: 12305921 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 63.10% | 36.90% |
| All Indica | 764 | 39.01% | 60.99% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 65 | 87.69% | 12.31% |
| Indica I | 349 | 30.09% | 69.91% |
| Indica II | 209 | 41.15% | 58.85% |
| Indica Intermediate | 206 | 51.94% | 48.06% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012305921 | C->T | INTERGENIC | None |