Detailed information of SNP:
|
SNP ID:
sf1012329022(Gbrowse)
Chromosome: chr10 Position: 12329022 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 63.95% | 36.05% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 496 | 7.66% | 92.34% |
| Aus | 64 | 65.62% | 34.38% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 67 | 17.91% | 82.09% |
| Group VI/Aromatic | 12 | 25.00% | 75.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012329022 | G->A | INTERGENIC | None |