Detailed information of SNP:
|
SNP ID:
sf1012329386(Gbrowse)
Chromosome: chr10 Position: 12329386 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 64.24% | 35.76% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 497 | 7.85% | 92.15% |
| Aus | 65 | 70.77% | 29.23% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012329386 | T->C | INTERGENIC | None |