Detailed information of SNP:
|
SNP ID:
sf1012349600(Gbrowse)
Chromosome: chr10 Position: 12349600 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 82.23% | 17.77% |
| All Indica | 798 | 78.32% | 21.68% |
| All Japonica | 497 | 86.32% | 13.68% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 212 | 69.81% | 30.19% |
| Indica Intermediate | 211 | 62.09% | 37.91% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 50.00% | 50.00% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012349600 | G->A | INTERGENIC | None |