Detailed information of SNP:
|
SNP ID:
sf1012356848(Gbrowse)
Chromosome: chr10 Position: 12356848 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 54.38% | 45.62% |
| All Indica | 797 | 24.59% | 75.41% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 10.70% | 89.30% |
| Indica II | 213 | 33.80% | 66.20% |
| Indica Intermediate | 210 | 40.00% | 60.00% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012356848 | G->A | INTERGENIC | None |