Detailed information of SNP:
|
SNP ID:
sf1012361031(Gbrowse)
Chromosome: chr10 Position: 12361031 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 62.02% | 37.98% |
| All Indica | 766 | 36.03% | 63.97% |
| All Japonica | 496 | 94.76% | 5.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 353 | 24.36% | 75.64% |
| Indica II | 207 | 40.58% | 59.42% |
| Indica Intermediate | 206 | 51.46% | 48.54% |
| Temperate Japonica | 334 | 97.60% | 2.40% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012361031 | C->A | INTERGENIC | None |