Detailed information of SNP:
|
SNP ID:
sf1012385214(Gbrowse)
Chromosome: chr10 Position: 12385214 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1240 | 91.94% | 8.06% |
| All Indica | 632 | 98.26% | 1.74% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 62 | 0.00% | 100.00% |
| Indica I | 346 | 99.71% | 0.29% |
| Indica II | 151 | 95.36% | 4.64% |
| Indica Intermediate | 135 | 97.78% | 2.22% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 37 | 75.68% | 24.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012385214 | C->G | LOC_Os10g24310(LOC_Os10g24310.1) | INTRON |