Detailed information of SNP:
|
SNP ID:
sf1012450425(Gbrowse)
Chromosome: chr10 Position: 12450425 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1361 | 96.69% | 3.31% |
| All Indica | 757 | 95.24% | 4.76% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 57 | 91.23% | 8.77% |
| Indica I | 360 | 95.56% | 4.44% |
| Indica II | 197 | 93.91% | 6.09% |
| Indica Intermediate | 200 | 96.00% | 4.00% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012450425 | A->G | LOC_Os10g24420(LOC_Os10g24420.1) | INTRON |