Detailed information of SNP:
|
SNP ID:
sf1012512834(Gbrowse)
Chromosome: chr10 Position: 12512834 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 97.04% | 2.96% |
| All Indica | 766 | 95.04% | 4.96% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 361 | 96.12% | 3.88% |
| Indica II | 205 | 95.61% | 4.39% |
| Indica Intermediate | 200 | 92.50% | 7.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012512834 | C->T | LOC_Os10g24510(LOC_Os10g24510.1) | Synonymous |