Detailed information of SNP:
|
SNP ID:
sf1012524050(Gbrowse)
Chromosome: chr10 Position: 12524050 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1340 | 51.27% | 48.73% |
| All Indica | 727 | 85.97% | 14.03% |
| All Japonica | 496 | 6.65% | 93.35% |
| Aus | 66 | 12.12% | 87.88% |
| Indica I | 340 | 90.59% | 9.41% |
| Indica II | 200 | 85.50% | 14.50% |
| Indica Intermediate | 187 | 78.07% | 21.93% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 93 | 11.83% | 88.17% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 38 | 47.37% | 52.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012524050 | G->A | LOC_Os10g24540(LOC_Os10g24540.1) | Non-Synonymous SNP |