Detailed information of SNP:



SNP ID: sf1012524050(Gbrowse)

Chromosome: chr10

Position: 12524050
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1340 51.27% 48.73%
All Indica727 85.97% 14.03%
All Japonica496 6.65% 93.35%
Aus66 12.12% 87.88%
Indica I340 90.59% 9.41%
Indica II200 85.50% 14.50%
Indica Intermediate187 78.07% 21.93%
Temperate Japonica335 3.58% 96.42%
Tropical Japonica93 11.83% 88.17%
Japonica Intermediate68 14.71% 85.29%
Group VI/Aromatic13 23.08% 76.92%
Intermediate38 47.37% 52.63%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1012524050 G->A LOC_Os10g24540(LOC_Os10g24540.1) Non-Synonymous SNP