Detailed information of SNP:
|
SNP ID:
sf1012558469(Gbrowse)
Chromosome: chr10 Position: 12558469 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 98.93% | 1.07% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 483 | 96.89% | 3.11% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 98.50% | 1.50% |
| Tropical Japonica | 86 | 93.02% | 6.98% |
| Japonica Intermediate | 64 | 93.75% | 6.25% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012558469 | G->A | INTERGENIC | None |