Detailed information of SNP:
|
SNP ID:
sf1012625018(Gbrowse)
Chromosome: chr10 Position: 12625018 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 62.40% | 37.60% |
| All Indica | 788 | 93.40% | 6.60% |
| All Japonica | 497 | 7.65% | 92.35% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 373 | 98.93% | 1.07% |
| Indica II | 210 | 89.52% | 10.48% |
| Indica Intermediate | 205 | 87.32% | 12.68% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012625018 | T->C | LOC_Os10g24700(LOC_Os10g24700.1) | Non-Synonymous SNP |