Detailed information of SNP:
|
SNP ID:
sf1012649562(Gbrowse)
Chromosome: chr10 Position: 12649562 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1295 | 82.70% | 17.30% |
| All Indica | 685 | 80.88% | 19.12% |
| All Japonica | 493 | 98.17% | 1.83% |
| Aus | 65 | 7.69% | 92.31% |
| Indica I | 350 | 84.86% | 15.14% |
| Indica II | 179 | 79.89% | 20.11% |
| Indica Intermediate | 156 | 73.08% | 26.92% |
| Temperate Japonica | 333 | 98.80% | 1.20% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 71.05% | 28.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012649562 | C->T | LOC_Os10g24730(LOC_Os10g24730.1) | Synonymous |